Scaffold Ga0318490_1004803

Overview

Basic Information

• Taxon OID: 3300031116
• Scaffold ID: Ga0318490_1004803
• Source Dataset Name: Metatranscriptome of forest soil fungal communities from Los Alamos, New Mexico, United States - Jemez Pines Pi 5A (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 870
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Forest Soil Microbial Communities From France, Sweden And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: USA: New Mexico
• Coordinates
  • Lat. (^o): 35.8911
  • Long. (^o): -106.2978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078067	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318490_10048031	F078067	GGA	LFGEEVLDKRRAVFVSASFLSKQYKSIPFATLSNSIFFFGAKRSWLFPSNRDEMLEARSQSTKYLEFDEDFKELILQKEQGGMCFWQKPHTDFKAASAFFETIVDPISGEHYLPLVLDDNWWKSEFDAKSARYTSNVEQIISNYKTGEHDYDAVMELIYQSNPTLDPTLYWADEAREN