Scaffold Ga0308197_10075788

Overview

Basic Information

• Taxon OID: 3300031093
• Scaffold ID: Ga0308197_10075788
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 939
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015676	Metagenome / Metatranscriptome	253	Y
F073291	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308197_100757881	F073291	AGG	VFAGLINQAKSAASHLVLKYVARASVAVPFVIAAGFALAALTVMLVERFGDVMAYWMVAGGLALIGVIASIVVS
Ga0308197_100757883	F015676	N/A	MTQQSGRSGYRYDQQNGVADQAMDKTRELADEALDRADEWLKPTGLSIKEHPMTVLAVVGGLAFAAGAAFWMLKSSRHQSRYDQVLATLSDLPRRAGWR