Scaffold Ga0265760_10000151

Overview

Basic Information

• Taxon OID: 3300031090
• Scaffold ID: Ga0265760_10000151
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17947
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011967	Metagenome / Metatranscriptome	285	Y
F034262	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265760_100001511	F034262	N/A	MKSAKTSAARKCPKKTLSASRKPLKQVDLGVIREQITSLVGNRAVEMVEITMAEVDKGHYLAMKYLFEMVGLCPAAATEGTVEEDSLAKTLLRRLQLPEEVQPGTEVTKDCVTNAVEEVSDTVK
Ga0265760_100001514	F011967	GAGG	VNLDDQGNSVSLKEHLLAMLALEHEMGAQRKVFSDLRFELAERALELDHIEMLRRLDLLNHAHEDARQKETSFVGREVYDSQTRENNKWRDEVNASLSTRQGRSSVTSGVAGAVGGLALSALFAMIMYLVKALLSGIPK