Scaffold Ga0074002_11459848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074002_11459848

Scaffold Ga0074002_11459848

Overview

Basic Information
Taxon OID	3300031086 Open in IMG/M
Scaffold ID	Ga0074002_11459848 Open in IMG/M
Source Dataset Name	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-2 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	653
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	USA: Montana
Coordinates	Lat. (^o)	45.755278	Long. (^o)	-113.910556	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026808	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074002_114598481	F026808	N/A	LPFVFEPGEQRLRLDDLFASVGLEEGEVEGSVSLGALTFPPSSARVLGWTISVTSVSPEVQFRTGLGHAKTARVVVPCAFPRPAEAPSAPRVSLVGPEATTFGVFGSITVYYKPQ

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