NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0061018_10603827

Scaffold Ga0061018_10603827


Overview

Basic Information
Taxon OID3300031085 Open in IMG/M
Scaffold IDGa0061018_10603827 Open in IMG/M
Source Dataset NameCoassembly of Cow X and Y Rumen Fluid
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)875
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location NameUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013386Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0061018_106038271F013386N/AKIFHEKKRNKNMMSSTSTDVNANVNPVYADVVKVKLFQDSTHPEMVKGWKDWSLKDITRILKDMIKPGKCYGVSGVEVGNIVFRKLLEAAADPNVPFEVIEEIVHTALETPALMNKFSVLYGFYTFNTQGVCDFFKEFVKRGIDDARYYDLIYTMLTHRIGDCFPLGFAMRQQNGFDDGVLAKLPLEMQEQLKSETIERDDKNTDRRLCYSLLTGESVAM
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