Scaffold Ga0315840_1004564

Overview

Basic Information

• Taxon OID: 3300031059
• Scaffold ID: Ga0315840_1004564
• Source Dataset Name: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T17 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1412
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.7417
  • Long. (^o): -117.7042
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042104	Metatranscriptome	158	N
F042105	Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315840_10045641	F042105	GGAG	LDGAPKPTQVDKKSYDRNRRNMAHYIGMDFLFTQREFCQSIQIDSEGRKVLVNSTRNGELLSVRAVPDHLAEKPWFKRKLRFPRQYLGITKMEERVKKLSYLVHVLTQHGFPSRAVLKSVYRLSLTWMFSKYEDMRKHIASITRKVTVLVGPTRSPWMPIKGGSQYPCFHGEKSHDNGIKAPLWSRPPYLKKGSVIPETV
Ga0315840_10045642	F042104	GGTGG	VSGGPSTVFLNPERAPPLLSKWQKALGKDLERIEVIYEENGVTVHLYGKEGTPYFVTDEEGSSKSVSVPEYKALKEKASLPSSEDAVYAFRNKFEVRLNKPFPEDLDLGDGSEAAIRRALQSLPFEDRRVMLLSNKQYRTAYPNGFTGAAGAAA