Scaffold Ga0308189_10242272

Overview

Basic Information

• Taxon OID: 3300031058
• Scaffold ID: Ga0308189_10242272
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 676
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001935	Metagenome / Metatranscriptome	615	Y
F065748	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308189_102422721	F001935	N/A	VYLKHLSSIQFLTYVAFFAVVIAAMFKFVPGKAPPVRTEPYPEDELGAHDRKTAKYFVAGGLFLVLGSIHMALKNLPWLSEYFARTGYAGHLVRDLSNT
Ga0308189_102422722	F000280	GGAG	MAEPEHERDVSPARPLVGYRDVGEDVRHSRRTMIRAWVILAALMIFYLGWTLIVFFLEPGLR
Ga0308189_102422723	F065748	N/A	KLEAFVHAEAEGAVRIHCYTTWDTPEQLEAFLERGYTFERMLVDVAGITAQPTLVMEKIF