Scaffold Ga0170834_112407533

Overview

Basic Information

• Taxon OID: 3300031057
• Scaffold ID: Ga0170834_112407533
• Source Dataset Name: Oak Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1758
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7184
  • Long. (^o): 6.3471

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F036398	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170834_1124075331	F036398	N/A	QNGSGGDELLAGVTTYVGVSPGMHVWLGMDWDVAHSTRATFMPVRRHISFGITRQFRLHIKRKEKR
Ga0170834_1124075332	F004042	AGGAG	MNIRKLALLFLLGSVFGPVTQAQVKHIEMRVEGMT
Ga0170834_1124075333	F000092	GAG	VKQHLGRQSGVQSVDVSLIDGKVDVAPKEDGQIDPAQLLKAVYDSGVTVAEMDVTVRAKIVKDSSGNFVLQVSPSQSLAIAPNDLLKTLEPLANSPAVVTIRGELYRKPTGKKKAAASVPLKLLILEVQKKE