Scaffold Ga0170834_110776705

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170834_110776705

Scaffold Ga0170834_110776705

Overview

Basic Information
Taxon OID	3300031057 Open in IMG/M
Scaffold ID	Ga0170834_110776705 Open in IMG/M
Source Dataset Name	Oak Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1103
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Champenoux
Coordinates	Lat. (^o)	48.7184	Long. (^o)	6.3471	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036827	Metagenome / Metatranscriptome	169	Y
F065659	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170834_1107767051	F036827	AGGAGG	MLTRPIDTSPHFHGCRVGLRMTGLLASFCASLLFSAASSQAQTKLDVQKLFAEHLRTAHGAAFNATSGVATVSTRDTDPVPIPGGLGPGIHIFAPGPPPIGQGVDVELSGITNIRGFSALGYLGGTATDSNGNNYLVGSDMRVFQGEYVSADGSHHRGTFVFI
Ga0170834_1107767052	F065659	N/A	LFWIIPVPDYALFVSNGTARLHLTEAGTIDNTFFLGPGTDYASATFDITWTPMGEVQHFRPGSSDPTNPSNFAAEIRFATATGSFTVLQNGVTYTITNASSAGVFAEMGTERNGSFLP

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