NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170834_108193359

Scaffold Ga0170834_108193359


Overview

Basic Information
Taxon OID3300031057 Open in IMG/M
Scaffold IDGa0170834_108193359 Open in IMG/M
Source Dataset NameOak Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)913
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000415Metagenome / Metatranscriptome1168Y
F010262Metagenome / Metatranscriptome306Y
F061747Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0170834_1081933591F061747N/APAKVESKNAELKLWCECCSIRIAPNEERTVVHDKTYHQHCYSKLSAKPKQ
Ga0170834_1081933592F000415GGAGGLTERFDSELSAALLGFSGEAVVYCQGISETIARDYAMEYARMLRNRATGMKPEFPRIPSGLFEPNRNLIRSTLDRMWEKYFPAS
Ga0170834_1081933593F010262AGGAGGVSDFKVGDRVKILPGVATPFVGMEGIIDEVQPHDEGIKTMSRHIVMFDRREKRAFYGGELVLVHKAKTRAAVQS
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