Scaffold Ga0170834_107067277

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170834_107067277

Scaffold Ga0170834_107067277

Overview

Basic Information
Taxon OID	3300031057 Open in IMG/M
Scaffold ID	Ga0170834_107067277 Open in IMG/M
Source Dataset Name	Oak Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1619
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Champenoux
Coordinates	Lat. (^o)	48.7184	Long. (^o)	6.3471	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033580	Metagenome / Metatranscriptome	177	Y
F043546	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170834_1070672773	F043546	AGGAGG	VQDQHTEVSRRSPNLFSVTEVAARIGADLETVMDWVEIGAIDRAVFGGGRFSKNELLRAALVFELVKFGLSSSCARDIVREMEYDLQQIWEGIPRHFKAYAIVIPTNRKWLVSWCWMRPAAEIDPFPVEDQIILPVSDILGRVTDETKRVRQH
Ga0170834_1070672774	F033580	N/A	MKKEEARRAVVSEYDRWAKKHPNDARMMGGFLFFRYLQEERSDLLDF

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