NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170834_104069656

Scaffold Ga0170834_104069656


Overview

Basic Information
Taxon OID3300031057 Open in IMG/M
Scaffold IDGa0170834_104069656 Open in IMG/M
Source Dataset NameOak Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1608
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000232Metagenome / Metatranscriptome1513Y
F079644Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0170834_1040696562F079644AGGAGMYPGYQPKPDDVFHAVGYTTRDISDNTHFHLHGISDRVRMENENLWRQLGPLVRAMQSGKVKREFVEVLSVDPFLGNYEMPYTGPHKEMFLSIEYLSDAAFRLCGEYGIRHPAVIEKVKRADIPGNHGVTLRTVHYSRI
Ga0170834_1040696563F000232N/AMKHAKQTKRAPPTHPSALAVPSYHRILVKHGLIEKTLSNSDAYEVFMKVGADPEVQKLRRKVGRGNKIKHVPALYLATAMALQGMTKQELEALKLRIEKKVAIP
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