Scaffold Ga0265754_1004895

Overview

Basic Information

• Taxon OID: 3300031040
• Scaffold ID: Ga0265754_1004895
• Source Dataset Name: Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 885
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.997
  • Long. (^o): 10.7902

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F008441	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265754_10048951	F008441	N/A	WDDVRRLADFLAGSGEQSAAADLRIQLGKAVFQTHSEQLRSISNTMPPTAVGEAIDALRAVLRDVPEEFPDRNREVNRFLAPLASAIHAIMKDQDIDIPLTSRVEHIATGGVAKYPDIVKISLDELAAEFEGTCS
Ga0265754_10048952	F001698	AGGAG	MAGVINDIEALAEFRAHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRLFGEALEEVTPGIAQYLSATEGHEAHLAALIERLRGYLETGAGAGLGVSGMSRSETSRGTGRGTERRD