NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302180_10460631

Scaffold Ga0302180_10460631


Overview

Basic Information
Taxon OID3300031028 Open in IMG/M
Scaffold IDGa0302180_10460631 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)628
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021139Metagenome / Metatranscriptome220Y
F026322Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0302180_104606311F026322N/ALASGFHVIELRDERGNRHLVQLAVGHDACPACGAVHPKDNLGSLDPAAAVRQVNQALNTSQQQMLVYAGKHGLTVK
Ga0302180_104606312F021139N/AMKRITLRQATRDDWPRILELHREHQAAQDTNYELPWLFGPAIAIALVGVEESGTIRNCIYVETIAELRFVGCDPKATAFSRREIEGLSYVLKLQGFRWLECFVPRQLKKMIQKPLQRAGFDCVDRELAHFAKD
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