NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0074019_11234313

Scaffold Ga0074019_11234313


Overview

Basic Information
Taxon OID3300030999 Open in IMG/M
Scaffold IDGa0074019_11234313 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 7 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1257
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Hordeinae → Hordeum → Hordeum vulgare → Hordeum vulgare subsp. vulgare(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSweden: Dalarna County
CoordinatesLat. (o)60.97Long. (o)15.87Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012187Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0074019_112343131F012187GGAMAQTVESLRPQIEPKIKELVDPIGRAEAEIMDKIKDAAMSVINPLLEQHVNPHMAKIMEIIQSPMTLSYDESFKMFGEQIDKFEVKAPKEELVKGFRQLDWYFRSWEMYNATRNIDILYDPLWALNVIFPDIYPWGLIWRGHDHIRNTMDNAMYTFEQRLLQACEGNEGALNEGKALAEKLKAETLEDYKYDAKLRTVEWYCEIIKKIIYPPFNAVVIPACNAIISPISDAIPDPVKQFVDIQQMFDDLINSIVDDSIKTVVSSGQK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.