NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074004_10184902

Scaffold Ga0074004_10184902


Overview

Basic Information
Taxon OID3300030996 Open in IMG/M
Scaffold IDGa0074004_10184902 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3B (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Riboviria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.7589Long. (o)-113.9119Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055741Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0074004_101849021F055741N/AKFTVTYCPAIACKMSTKCVQIAPLMPVLKHTTATAMTQDDIARANRVSLSLYGATSSMDIDPTLVPFFGEMRTTCINKSRNAKNYQDHVSRCKIRARSLMTTESIDIDAQQLSDVARFSFFIDFEDQYGADKTMFDQAYAKVLMADPLYKQGSGVMMTGTLSMLTDMLMAAADAKDVKMGVVKAARHGIQHLNRNKVLNTL

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