Scaffold Ga0073994_10061652

Overview

Basic Information

• Taxon OID: 3300030991
• Scaffold ID: Ga0073994_10061652
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4399
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.7544
  • Long. (^o): -113.9094

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007192	Metagenome / Metatranscriptome	356	Y
F088333	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073994_100616522	F007192	AGGA	MLPKHFRHAIAGLLALAFATSLLALGQFWDFLGYTQVDSSQDHSRIQITRRDGHFRTIQLRVSGEAIFFDRLVVHFDDGTSQELMVSDRISPGGRNYVIDLLGERSLESIELWYYKEPRGHNPRVSLYGVRSPEGDGPNIAQEH
Ga0073994_100616524	F088333	AGGAGG	MNTTKRNGHVALLLPLLLLAAGPSLRAAEKSNWGNLKQAAPGQTIKVIATDGKSSQGDFQSVSDDALVVRLAGGDRSFPRETVQRVSIKRDGHRGKHALIGAVIGAGGGLGAGIAVDHCTPTVIVCTDNKGKAILTPGFALLGAGIGALLPAGGWREVYRSR