Scaffold Ga0308178_1010281

Overview

Basic Information

• Taxon OID: 3300030990
• Scaffold ID: Ga0308178_1010281
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1300
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001264	Metagenome / Metatranscriptome	735	Y
F012099	Metagenome / Metatranscriptome	283	Y
F048135	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308178_10102813	F048135	AGGAGG	MSVEENKALVRREQGELWNHTGSLDAAAELFAPDRVEDAKQEAANVRRAPT
Ga0308178_10102814	F001264	AGGAG	MRAEQTVKEMAQVVLWRQAKAQAQRTGQSYTSARAAVLETPAGCQLEELRSGAHQDEETRYWQANLLFKRVSEQASQPV
Ga0308178_10102815	F012099	N/A	VALECDCGEKVTLSATSTTATCSGCGADLGTFVHDIRERKDRLPDKLTHPWFYDARERAQQHEHDEAAHHEGSRWRYNDITAAPNEE