NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073941_12149862

Scaffold Ga0073941_12149862


Overview

Basic Information
Taxon OID3300030953 Open in IMG/M
Scaffold IDGa0073941_12149862 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_S_5 metaT (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)883
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094865Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0073941_121498621F094865N/ADYKMAIKACDTGLKVWESWGEVTATFKCEFNQETTYKMPFEGAPEAKVVVTHNGPGKYSWVVKAEGAAEEWKLHFCDEGMKLCARNLNTGDACSSELYKEHLPIIGKWKTASMSGAKELLELMGVPAAEAQKFADEVVILEIEEKGPIVRYNYKSQFQPMDLSFKWNEETDQYDPFLKETTKNIATKSGNVMTVLTHSSMGTWISKVTVGHTFMVQKAWLKGMEQMPTTSIFIRQGM
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