Scaffold Ga0074031_1543434

Overview

Basic Information

• Taxon OID: 3300030949
• Scaffold ID: Ga0074031_1543434
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C3 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 736
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Sweden: Dalarna County
• Coordinates
  • Lat. (^o): 60.97
  • Long. (^o): 15.87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006433	Metagenome / Metatranscriptome	373	Y
F007657	Metagenome / Metatranscriptome	347	Y
F061592	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074031_15434341	F006433	N/A	MADTSYRIVHREDDTFAVEIVRVGALPQTAAGFATEAAAKGWIAQDERFRSAADP
Ga0074031_15434342	F007657	N/A	VSWVTFEAAAGGLLTVQLRHIVAIYDEQGMVKLATTAGGVHALKDITVQRAAGIVSNAEDATAVRPEQ
Ga0074031_15434343	F061592	N/A	APDDEPTQADEDAAAMKDQLQKDVASWREGRTDGSSRGATELSVAVARSIVPPTTARMKRAKPATTEVKLTSTEKKPFGMSYDGTSRADYIKLMISRGAR