NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311366_10110739

Scaffold Ga0311366_10110739


Overview

Basic Information
Taxon OID3300030943 Open in IMG/M
Scaffold IDGa0311366_10110739 Open in IMG/M
Source Dataset NameIII_Fen_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2360
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019774Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0311366_101107391F019774GGAMVAVVPVPVIFPGLIVHVPVAGRPFNTTLPVVAEHEAGWVIVPTTGAVGAAGGSLIITFADAFDIHPGSL
Ga0311366_101107392F019774N/AVPGTRFAIVAVVPVPVIDPGLIVHVPVAGNPLNTTLPVEAAHVDGCVTVTTTGAVGATGGAFITTTADGFDIQPAELVTLKL
Ga0311366_101107395F019774AGGLEIVTLVPVPDIAPGLIVHIPVAGRPFNTTLPVVAIHEAGWVIVPIIGAVGATGATLITTLADSTDIHPASLVTLKV
Ga0311366_101107396F019774N/AVPGARFAMVVVVPVPVIPPGLIVHVPVAGSPFNTTLPVVAEHEEGCVIAPAIGAVGADGATLMITSADARDIHPAAAVTLKL
Ga0311366_101107397F019774N/AVPGMRFGIVIVVPVPVIAPGLIVHVPVAGSPFNTTLPVVAEHDRGWVIVPTIGAVGATGASLIIISAEARDIHPGSL
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