NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247549_102177

Scaffold Ga0247549_102177


Overview

Basic Information
Taxon OID3300030942 Open in IMG/M
Scaffold IDGa0247549_102177 Open in IMG/M
Source Dataset NameMetatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)685
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047359Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0247549_1021771F047359N/AMLSRSIHTYAAPSDPLAGTVRFHCSAAYTPCLRCALPPRRPTTGSVLSLRILSQHVALCDSGESGGCVHPVPSPPTLAFVPLVQTRHSHPSRKSVSRGGHLSELHYGSLALQPADLFTLLTDRTGFTPSPRGFLLPGFRRVGHPPRRRLLLRWQLGNFHRRDLHPQEWQLASLHTEVVP
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