NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302314_11477366

Scaffold Ga0302314_11477366


Overview

Basic Information
Taxon OID3300030906 Open in IMG/M
Scaffold IDGa0302314_11477366 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)615
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025071Metagenome / Metatranscriptome203N
F075194Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0302314_114773661F025071N/AMTNAEAGVVGAVLGFGLIALLLYLAVDRYHIRKEQLVEAGLYLFVIAAAVFAPVLRKFTTRGKRNKRPPFVIPARKDERAIESAWNQNAVLLGY
Ga0302314_114773662F075194N/AAYLIQWWLTHPGPYPAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALQGQRKWKMLMTAASLVAVMGCGKVLEIYLAPM

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