Scaffold Ga0308200_1008550

Overview

Basic Information

• Taxon OID: 3300030905
• Scaffold ID: Ga0308200_1008550
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1422
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000818	Metagenome / Metatranscriptome	878	Y
F004649	Metagenome / Metatranscriptome	429	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308200_10085501	F000818	AGGAGG	VEPKKDELKGRFQIEQIEERVAPAIVAVNGGGNTPNGEANGVPRLNPAGHAPPGQN
Ga0308200_10085502	F004649	AGGAGG	MDQQQTKNRFQIEQLEERVAPSNANFPPGQFPSGNPAHAPGQSNPNEVPANNPSNG
Ga0308200_10085503	F000818	AGGAG	VEQQKEKKGRFQIEALEERIAPAITAVQINGGGNTPNGNANGVPTTYLNPSGHAPPGQN