NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265743_105499

Scaffold Ga0265743_105499


Overview

Basic Information
Taxon OID3300030885 Open in IMG/M
Scaffold IDGa0265743_105499 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9989Long. (o)10.7903Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007657Metagenome / Metatranscriptome347Y
F061592Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0265743_1054991F061592AGGAMSVGTIHDPSRDDSTPVGDDGADALKDQLRKDVASWREGRADGSSRQATELSVAVARSIVPPTSAKMKRAKPIAAETKAATAEKKPFGMSYDGTSRADYIKLMISRGAR
Ga0265743_1054992F007657N/AVSWVTFEAAAGGLVVVQLRHIAAIYDEQGEVKLATTAGGVHSLKDITVRRAAAIVSREEDAKTVRPEPL

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