Scaffold Ga0265770_1021496

Overview

Basic Information

• Taxon OID: 3300030878
• Scaffold ID: Ga0265770_1021496
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1026
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001473	Metagenome / Metatranscriptome	688	Y
F002408	Metagenome / Metatranscriptome	562	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265770_10214961	F002408	N/A	LVPAVSDAGQMDFAIDYRQPQLQAQVAQPKPAPVAVVSAVPTEMLLNSTPVRLVGGAAAKADLGVLIRDVYRRQDEVFVRFSIENRSSQTLRAGPPAVVSLTGLKFDRSLWAFQNAQLGMEYASRLKTYDAPIPVKITQCEPGVAEVGPGAARIGLIALQLPPVSPDAKKTQPTVLKILFPIDRAGNLTATLVL
Ga0265770_10214962	F001473	GAG	MESEYQTVGQMYERLRLMIRQRNDTGFRLAMTDAVLEPRNPFEPASKRRPKSVVAITLILVLVLSLIFLYFSLGMPGAPWKVATPL