Basic Information | |
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Taxon OID | 3300030878 Open in IMG/M |
Scaffold ID | Ga0265770_1021496 Open in IMG/M |
Source Dataset Name | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1026 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Norway: Oslo | |||||||
Coordinates | Lat. (o) | 59.9979 | Long. (o) | 10.7895 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001473 | Metagenome / Metatranscriptome | 688 | Y |
F002408 | Metagenome / Metatranscriptome | 562 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265770_10214961 | F002408 | N/A | LVPAVSDAGQMDFAIDYRQPQLQAQVAQPKPAPVAVVSAVPTEMLLNSTPVRLVGGAAAKADLGVLIRDVYRRQDEVFVRFSIENRSSQTLRAGPPAVVSLTGLKFDRSLWAFQNAQLGMEYASRLKTYDAPIPVKITQCEPGVAEVGPGAARIGLIALQLPPVSPDAKKTQPTVLKILFPIDRAGNLTATLVL |
Ga0265770_10214962 | F001473 | GAG | MESEYQTVGQMYERLRLMIRQRNDTGFRLAMTDAVLEPRNPFEPASKRRPKSVVAITLILVLVLSLIFLYFSLGMPGAPWKVATPL |
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