NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265770_1000924

Scaffold Ga0265770_1000924


Overview

Basic Information
Taxon OID3300030878 Open in IMG/M
Scaffold IDGa0265770_1000924 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4068
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002623Metagenome / Metatranscriptome542Y
F008310Metagenome / Metatranscriptome335Y
F060173Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0265770_10009243F002623N/AMIVREYKESDLDALRGMHAQQGYGYAFPDLADPLFVSKLVVEDDEGRAVMASLARLTCEMYLLLAPGEGRPRERYERLLVLHSAGERDLLARGLHDAHAWLPPPISKKFGRRLTTLGWVRDDTWTPYCRRLVCNLTRKMVG
Ga0265770_10009244F060173N/AMTGKRYYITTLGAWQRHAGRFANSHWLALNEIACESVSDTSTADDARPIIVLVEGDEGAHLALEDDAAFEALPHPLAQKSISQSARDALASHDVPYGATTFDVAEAVGRAHPLLRHSVF
Ga0265770_10009246F008310N/ASQEIQPTWDAINWQYGQLIWVQVDTQHKRIYVGVPMGAATQPNQILMLDYTEGMQDPLVSVYTVAAERSRKWAPWMISANSCGLIERSNGVAQLFLGTNNSSGKIYALTEGQFSDDGAAINSFYSTAFLAATGLSGRNLFGYLTAYVQGAGSLALSAALPGSVIVMSLGAWTLAAPASRDMEQFTNVLAERVAYQIGTNAAGSWFSVTKLVPWAKLDPFAIVRGTN

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