Scaffold Ga0265770_1000924

Overview

Basic Information

• Taxon OID: 3300030878
• Scaffold ID: Ga0265770_1000924
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4068
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002623	Metagenome / Metatranscriptome	542	Y
F008310	Metagenome / Metatranscriptome	335	Y
F060173	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265770_10009243	F002623	N/A	MIVREYKESDLDALRGMHAQQGYGYAFPDLADPLFVSKLVVEDDEGRAVMASLARLTCEMYLLLAPGEGRPRERYERLLVLHSAGERDLLARGLHDAHAWLPPPISKKFGRRLTTLGWVRDDTWTPYCRRLVCNLTRKMVG
Ga0265770_10009244	F060173	N/A	MTGKRYYITTLGAWQRHAGRFANSHWLALNEIACESVSDTSTADDARPIIVLVEGDEGAHLALEDDAAFEALPHPLAQKSISQSARDALASHDVPYGATTFDVAEAVGRAHPLLRHSVF
Ga0265770_10009246	F008310	N/A	SQEIQPTWDAINWQYGQLIWVQVDTQHKRIYVGVPMGAATQPNQILMLDYTEGMQDPLVSVYTVAAERSRKWAPWMISANSCGLIERSNGVAQLFLGTNNSSGKIYALTEGQFSDDGAAINSFYSTAFLAATGLSGRNLFGYLTAYVQGAGSLALSAALPGSVIVMSLGAWTLAAPASRDMEQFTNVLAERVAYQIGTNAAGSWFSVTKLVPWAKLDPFAIVRGTN