Basic Information | |
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Taxon OID | 3300030878 Open in IMG/M |
Scaffold ID | Ga0265770_1000924 Open in IMG/M |
Source Dataset Name | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4068 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Norway: Oslo | |||||||
Coordinates | Lat. (o) | 59.9979 | Long. (o) | 10.7895 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002623 | Metagenome / Metatranscriptome | 542 | Y |
F008310 | Metagenome / Metatranscriptome | 335 | Y |
F060173 | Metagenome / Metatranscriptome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265770_10009243 | F002623 | N/A | MIVREYKESDLDALRGMHAQQGYGYAFPDLADPLFVSKLVVEDDEGRAVMASLARLTCEMYLLLAPGEGRPRERYERLLVLHSAGERDLLARGLHDAHAWLPPPISKKFGRRLTTLGWVRDDTWTPYCRRLVCNLTRKMVG |
Ga0265770_10009244 | F060173 | N/A | MTGKRYYITTLGAWQRHAGRFANSHWLALNEIACESVSDTSTADDARPIIVLVEGDEGAHLALEDDAAFEALPHPLAQKSISQSARDALASHDVPYGATTFDVAEAVGRAHPLLRHSVF |
Ga0265770_10009246 | F008310 | N/A | SQEIQPTWDAINWQYGQLIWVQVDTQHKRIYVGVPMGAATQPNQILMLDYTEGMQDPLVSVYTVAAERSRKWAPWMISANSCGLIERSNGVAQLFLGTNNSSGKIYALTEGQFSDDGAAINSFYSTAFLAATGLSGRNLFGYLTAYVQGAGSLALSAALPGSVIVMSLGAWTLAAPASRDMEQFTNVLAERVAYQIGTNAAGSWFSVTKLVPWAKLDPFAIVRGTN |
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