Scaffold Ga0265727_100859

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265727_100859

Scaffold Ga0265727_100859

Overview

Basic Information
Taxon OID	3300030875 Open in IMG/M
Scaffold ID	Ga0265727_100859 Open in IMG/M
Source Dataset Name	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU4 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	836
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9992	Long. (^o)	10.7901	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006591	Metagenome / Metatranscriptome	369	Y
F031504	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265727_1008591	F031504	AGGCGG	MPRALTTRKWELPTRGRDYQLIPTFPRLPGIIPEDSAGGPTLASQSLRKPS
Ga0265727_1008592	F006591	N/A	CSPHTLSQSPVLGRPPSQVGGRLLDASPRGNAEFSVSWQDRRQDYSRRLLGEAFQRGSHGPCRGSVLHKVMRPLRHGLVTAVLQVGPRELPPERWPDGTGLASYPSIDI

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