Scaffold Ga0102749_1434589

Overview

Basic Information

• Taxon OID: 3300030867
• Scaffold ID: Ga0102749_1434589
• Source Dataset Name: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2C (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1228
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: New Mexico, USA
• Coordinates
  • Lat. (^o): 35.8911
  • Long. (^o): -106.2978

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023069	Metagenome / Metatranscriptome	211	Y
F041303	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102749_14345892	F023069	GAG	MDTNGARAYTTPGEQEPSPAEALRRLQQQVGELQAYLTHFVSAKIDGFILSAQQLALWAALGVIGLTAAVGLVVTAVVLVLVGAADGFALLFGGRWWLGALVVGVGTLALLIVGVFIGMRTWQSRWRQQKVQQYDERQLQQHATFGHSVADRATEETALQH
Ga0102749_14345893	F041303	N/A	MPHSDTALLTEPQKKQHYNTDDERVFLTQQATDAKIAIQHTVADMQATAKEVANIRWWTQQYPWYAVGAVTVLGFIATTSVLAPANRQPRPAPPVASQAAARPSWTSSLFETLRSILMSIIVDAL