NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075387_11799392

Scaffold Ga0075387_11799392


Overview

Basic Information
Taxon OID3300030850 Open in IMG/M
Scaffold IDGa0075387_11799392 Open in IMG/M
Source Dataset NameForest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010889Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0075387_117993921F010889N/AAYQVDEKMLVKDYWFRTMTSSDGAFKVASQRIIEDIIAFQMDKKNRGMRDGYLNDPENLFCEEIKKWCADILCTFEKTKTARDKITERIQYLEYCLLLPNLFDKPSQLSEHTIQRVMVNSRRILKYQVLADIEKELATEDAGRAFEDLRKHCVKLIYNCYQFLAHVFRAEVDGQLTAADKLLKTLEEDEQLTKVMGDDLTKVMDQISGVKSKNEKYTFDLGQRGLKSVLDFLDLPKLSENDPNLPFLFNGPLSGLEEFFRGNSFITFKYLKAHALLLELGKLFQVIEKAANCAKQGGTLLVYGVANAQLNALLDSTKQMINAIRDEFTAVCKIAECAFEKLVYENKATVERSKWMKHFQHVFPASNMINESIKEVLHDVADIKATANAMTLYERFQKAQNDTADFLSSAEGFSQRTAVVLGQEYKKPEIKEEDLKKGSIDNTESLFAQINQSVNK
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