Scaffold Ga0075388_11643502

Overview

Basic Information

• Taxon OID: 3300030848
• Scaffold ID: Ga0075388_11643502
• Source Dataset Name: Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1183
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7184
  • Long. (^o): 6.3471

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005850	Metagenome / Metatranscriptome	388	Y
F105992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075388_116435021	F005850	N/A	MRKSTPTLTLTQSGLLAVLLQRQRDAVIESARRDVHREHMRAAFWKTLTWPFRALTARTLADDSAKPLVGTVPRHT
Ga0075388_116435022	F105992	GGAGG	MTPLLVRFPDKSVKLDDVEEGRVLTALEVIYEGGSLHGKTADLPSRDLERVVLRVHGRNRHFFETYERTICVDIRSRRTVFRYAGLTSKSNNSSWWKRLPAKRKSEDANVYRAQFAGLRIRKLKAI