NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075404_11232448

Scaffold Ga0075404_11232448


Overview

Basic Information
Taxon OID3300030842 Open in IMG/M
Scaffold IDGa0075404_11232448 Open in IMG/M
Source Dataset NameForest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016217Metagenome / Metatranscriptome249Y
F053582Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0075404_112324481F053582N/AMKKSDLLRALQTEIQKHNLSTYMSKEHKIVQTGCSACQKHFGTVEQYTRHLTEDVLPPLLDKLSIEAK
Ga0075404_112324482F016217GGAGGMPVALPEPDGEREGIPLWLCPNCDKFKPLEDYGWRMRKDICPGQQVWFKQGWCNRCLEAKIKDDEIGIT

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