Scaffold Ga0265750_1001078

Overview

Basic Information

• Taxon OID: 3300030813
• Scaffold ID: Ga0265750_1001078
• Source Dataset Name: Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2453
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013584	Metagenome / Metatranscriptome	270	Y
F097836	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265750_10010783	F097836	N/A	MFCPNCKAEYREGFTRCADCDVELVYELSAAAIIPIEPIDPGDPVEDPFCSFWKGDDPRVHAELCELFAEQDIPFKTIRRQDHLFNWNTKSAFEIGVPFSRFDKAEAVVKEAYGGDEEPVSEDVARTLELPEVVEPREPHPARGPGDCYPEDATLEIWEGKQEEMGELLAASLGENQIHSRMAEAKGTYRLFVLPADETRARKIVREVVEGVPPE
Ga0265750_10010784	F013584	GGAGG	MAASPGPEGSLVMLWAGEDPALHSSLIEELQSAGIPFIDRPTGDDQVPPSADILPIDWKTQFGFEVAVPSSNRAAAEKILERLLDQEPADMEIAANDSAQPGVADVKPAHLSATTCAVWTGADETRADFLVEALKENEIPARAETRGSEATVYVPPEEEMLAREIIREIVEGAPPA