Scaffold Ga0061015_10648764

Overview

Basic Information

• Taxon OID: 3300030773
• Scaffold ID: Ga0061015_10648764
• Source Dataset Name: Coassembly of Cow Y Rumen Fluid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1527
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location

• Location Name: USA: Illinois
• Coordinates
  • Lat. (^o): 40.102108
  • Long. (^o): -88.227299

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015685	Metagenome / Metatranscriptome	252	Y
F023770	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0061015_106487642	F023770	GGAG	MAKVEFDPGIDSVRGILMGTDPFYIRRYPGREGVMHIVQARPNRSDHIPSEAEAHTRIVFAQKYGHEKHLAFLERKFKNQLTINFID
Ga0061015_106487643	F015685	N/A	MFARVRGKFNKSETLYFKGCPCKQEQLGVDLLNPSKANHAKNILSQEALKDAAQAAQTALADPTERATLEAGFAAQKKYKSLFSYTVAQKYVKPNFA