NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265720_1000845

Scaffold Ga0265720_1000845


Overview

Basic Information
Taxon OID3300030764 Open in IMG/M
Scaffold IDGa0265720_1000845 Open in IMG/M
Source Dataset NameMetatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1223
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038319Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0265720_10008451F038319GAGGMLNLWWAAPLTDDQARNVLLSLDPNADAAEIYSALEKRKKDAAKFGICLNEFFLRNGSQAANNARAAWSEISTHDSGADPNVNYELDMKSFDLLTLDIRAACLKQLFSYARMAHGNGRIL

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