NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265720_1000086

Scaffold Ga0265720_1000086


Overview

Basic Information
Taxon OID3300030764 Open in IMG/M
Scaffold IDGa0265720_1000086 Open in IMG/M
Source Dataset NameMetatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2353
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013584Metagenome / Metatranscriptome270Y
F097836Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0265720_10000863F097836N/AVEKRRIDLSGAGVRVVNVALILQGIRIAEAKRRNPCNWRKLQEFQRVTGRVYVFQRSALCDVVDFLAATMFCPNCKAEYREGFTRCADCDVELVYELSAAAIIPIEPIDPGDPVEDPFCSFWKGDDPRVHAELCELFAEQDIPYKTIRRQDHLFNWNTKSAFEIGVPFSRFDKAEAVVKEAYGGDEEPVSEDVARTLELPEVVEPREPHPARGPGDCYPEDATQEIWEGKQEEMGELLAASLGENQIHSRVAEAKKVYRLFVLPADETRARKIVREVVEGVPPE
Ga0265720_10000864F013584GGAGGMAASPGPEGSLVMLWAGEDPALHSSLIEELQSAGIPFIDRPTGDDQVPPSADILPIDWKTQFGFEVAVPSSNRAAAEKILERLLDQEPADMEIAANDSAQPGVVDVKPAHLSATTCAVWSGADETRARFLVEALKENEIPARAETRGSEA
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