Scaffold Ga0265763_1002403

Overview

Basic Information

• Taxon OID: 3300030763
• Scaffold ID: Ga0265763_1002403
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1434
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9989
  • Long. (^o): 10.7903

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020232	Metagenome / Metatranscriptome	225	Y
F045388	Metagenome / Metatranscriptome	153	N
F066033	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265763_10024032	F066033	AGGCGG	MTTQSRAVLQRILQRRTNWAPAGESFGCPRCHAKYAVIRRQMPPGMIPACETCDQEFPPAQDGEWLLYERADA
Ga0265763_10024033	F045388	GAGG	VRSSHLTDDDLWRVIDDNTDAMSVLIEKQFELDGEAGAPDPDTRQKLMLFNVQAIDNYDRQYRDCIAEIRRRYPSI
Ga0265763_10024034	F020232	GGAGG	MAEPSAEPIPPDYAEAFAYAVLVYEIWTPEEPGRLIEIGSRSFSIVEVCKLVDQFTDRLPERVYLKLRAYMHDDPDGKLKADLAADPSYATAVRCLRGMMERR