Scaffold Ga0265762_1009384

Overview

Basic Information

• Taxon OID: 3300030760
• Scaffold ID: Ga0265762_1009384
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1744
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9992
  • Long. (^o): 10.7901

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265762_10093841	F003631	N/A	MMELLLNIAWVLLALPACWLWRRNAEARQIRRLSGLQCLLALGCVLVLLFPVISATDDLHAMRAEMEDSVNSKRAVRQAVGEKNSAWVNRLQAPPVAVASSGWLALPEVGRYEFVVSSARPLARQSVLRAGRAPPFSFLG
Ga0265762_10093842	F004157	AGG	MDQATRDGRIVMRSVVVCALMMMVTVGGWGQSSPTQGLVIEPEELPGTYPQGTYEVRFHARGNYVPVLHWKLEKGALPAGIKLEDDGNLHGQAQRAGEFQFTVSVRDGGQPQQAVQKQFTIKVVDAIAVAWKVPAHVNVSRIEGSVEVSNTTADDMDLTFDVKAVAENGRATEIGYQHYVLTKGTIGMALPFGENLPHGAYVVYVSVVGEVAQRNAIYRQQLQTARALQVVPGP