Scaffold Ga0265762_1000053

Overview

Basic Information

• Taxon OID: 3300030760
• Scaffold ID: Ga0265762_1000053
• Source Dataset Name: Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14275
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9992
  • Long. (^o): 10.7901

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014289	Metagenome / Metatranscriptome	264	Y
F039603	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265762_100005310	F039603	N/A	LKCLLLAVPVASLFAQTPALQMNVVYVCTDGQSFKVFSCDNTTGACDYQNYKKGQAYQRGEALRVQLAALLPAKCHAQTPAETQADPHRGEIPPAPSPFKARASAGSNGSGSTGAVNSPTSGPGGFKVGDSVRF
Ga0265762_10000539	F014289	N/A	LIDGWQEAKIIQVHGRSYVVHLPNGIDVSKLWPLEVRRLGKLTAEDHAAGQYDLHDRVQVLVNGKWMEGEIRGQNLNLYDIRVPGVDTGFGSDIVNTTPENIRMSTTPAPPPAAQRAAGQAPKPGLASCAGKYEGRWEHVSGMGGMKVVFRSGKATISEGLGGEMPFDCFTGDGKVVFYKAGSFTPFSYDFDINNDGTLQTPLGAIKKIGN