Scaffold Ga0265762

Basic Information
Taxon OID	3300030760 Open in IMG/M
Scaffold ID	Ga0265762_1000001 Open in IMG/M
Source Dataset Name	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	57711
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (78.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

57711

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (78.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9992	Long. (^o)	10.7901	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Norway: Oslo

Coordinates

Lat. (^o)

59.9992

Long. (^o)

10.7901

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048424	Metagenome / Metatranscriptome	148	Y
F059437	Metagenome / Metatranscriptome	134	Y
F065202	Metagenome / Metatranscriptome	128	Y
F082044	Metagenome / Metatranscriptome	113	Y
F102028	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265762_100000117	F082044	GAGG	MSVTLKLVHEEGIRLRQQAAHKIEHTDEKTKAVTTSVDWRFVKRPDSGGKVVEECQQDEDPRRVDSNGRKMQLGTYTVHVTHGMNNLVIERKGKVTPFNFKNGAIRNQVRIQYQRLVDSGRKTKDQKPVHEWKNDGAPQYLPPNTFGGAFVGEGQRAIVDEMPT
Ga0265762_100000121	F102028	N/A	MGQNVADDDQLGSLAKAKTSGAPSTPWGKWPKIKPETVAPLRDGRPDMYNHTPTRFVSLAEAKARGWKHFWTGEVCVTGHRAARYVANGSICVDCQRVERGQIPVYGKGVPELEAARRRAYTQKNTAPAGPPVPSAGEKNFLAKYAELKDFALAADACGRSESEFLAILSWNTTFRDAVNRLEESIGVTRTLSVTEDFDWTDEKRRAFLITYANTADMKQSLRSVGATNVQFHKELNSNSEFQKDFDDAAQVARSVFDHAASAAATKGDARMLGRIAANFFPEKFGESLKMDLNVKQNLNADQINAQITHLLSRFDRQGLLSAPDEPERDAVEAEYREIEPVGADEAAELARAESADAGPDPNSDLVSGFV
Ga0265762_100000122	F048424	GGA	MMLTEELEEVGKRTRVLRDRVLVKILPYAHPTLATPGIEINKGVVIAVGYGRRQRRKVAFKQEISEGPPVLSADGRVMQFAKSKLSGKTLWFEDGDETGAIIPMQVKPGDVIEFSFRNITLVDFDRVGFPGIGDLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNFMSGSEDWHRA
Ga0265762_100000124	F059437	GGCGG	MPQIGNRYLQGTPILPYANVKAYPNTDIFFDLQFVDHTNTPVIPTDIRLEIDDISSATVAMASTPVTLVSTGAIGTVASPFTYPAFAATMYLQVLASAWQMTFPYVGSQLCQVGMQFTAIDSVTGQPFTSTAVIAIIELCALATVSGLAY
Ga0265762_100000128	F065202	N/A	MRAVAHGWSKPGGGGPSVSVAKEFMHADERSKRGARSKEQRADRKREMNDWAEGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0265762_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences