Scaffold Ga0265461_10010049

Overview

Basic Information

• Taxon OID: 3300030743
• Scaffold ID: Ga0265461_10010049
• Source Dataset Name: Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2134
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.2736
  • Long. (^o): -71.1993

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053416	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265461_100100493	F053416	GAG	MASRLRRRSPWAGTLVLALLLFRAYVPLGFMPADGVPFALQLCPSAMAGMPAHLHHHAGTHAEFESCPFGSVPAAGPISQHIDFGSVGPAPALKILALETPRLVERAQRSHQSRGPPSLA