NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302311_10459369

Scaffold Ga0302311_10459369


Overview

Basic Information
Taxon OID3300030739 Open in IMG/M
Scaffold IDGa0302311_10459369 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)884
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104286Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0302311_104593691F104286N/ATRAQYTSGRLVIYSCRSGGKTLAPAQGSPTCAKPVSGYFTKTGGNEAPYTMAQVWIDLLIHTKKSYGGTAPHNVGGYLAIADPKNGWVFGSTVCGPSKVAPNAPYGLAGMEALYVAATQYYHANPDKSLGATPSDQACAEIDQMTDKGSDLDNYNTTSPSSGGQNGNGNYSDPSLPIIFGDNVGYTQDSVVAGTSQIALLPKSFEVSPAGNDSDFWAEVPECGVADLSSATVGNGWTTHIASAETCTDSDYVAGMHDNVAGKISSANFGKDGIDSPKTLVGQHGYYQPIRQWVV
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