Scaffold Ga0265462_10138006

Overview

Basic Information

• Taxon OID: 3300030738
• Scaffold ID: Ga0265462_10138006
• Source Dataset Name: Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1194
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.2641
  • Long. (^o): -71.2157

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007373	Metagenome / Metatranscriptome	352	Y
F007553	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265462_101380061	F007553	AGGA	VSRENVRQHLTAMATSNCMGGSINGMNASNKGAMKVDLGAISTMFDDKICAVDFCEGAAVASLAQQDFCLNHFIDLCYENLQRIDPRGQKMGRVNLDRASLRAFIEECSRQALDAALRCDDLDNLQRGRLLDILLWAGELFLLLRAPTRGTD
Ga0265462_101380062	F007373	GGAGG	VSRSFATHSLSNPAAPVDSNALSTSARTLGMCYTSSRITALSIEFVAKPNEAHKVHAALPAAINGALGEVAGFAGCFVMIANHEARLVTVVTLWSGEDRLQRSSENLRWVRALLAPYLDRGLRVQTLAAYVPAALQISQLFEQTCSEEPFEARLSEEAALCVA