Scaffold Ga0307482_1032973

Overview

Basic Information

• Taxon OID: 3300030730
• Scaffold ID: Ga0307482_1032973
• Source Dataset Name: Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004502	Metagenome / Metatranscriptome	435	Y
F026928	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307482_10329731	F026928	GGAG	VLLLAGASGLPCPFFMFGQLCVALCEADGEGLAAADAAWAAVVPVVDDVVDAVEEWLVAALATAMLPPNPTPSAPAPTAVPIMIVPSLDFNVSASSRSGDGPGTQ
Ga0307482_10329732	F004502	GAG	VDNDVGKPGQQFRASWQAAADALGEWSKRVSEATHEAMEKIEPAVRSAVEAGRSAMTGEWRNCRCQCRTAHPADGGVCDGRAVMTRSVGGADVSLCAPCAVAQGVAEMKL