Scaffold Ga0307482_1028577

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307482_1028577

Scaffold Ga0307482_1028577

Overview

Basic Information
Taxon OID	3300030730 Open in IMG/M
Scaffold ID	Ga0307482_1028577 Open in IMG/M
Source Dataset Name	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1225
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004193	Metagenome / Metatranscriptome	449	Y
F009615	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307482_10285772	F004193	AGG	VPSLHASIVRRSARVMSKRRASLVINLDRKAKRLPCLVVDSSKEGYRLRGSFNLRRGQIVELILDEDLPNPESCRVVWVGKVGSRQEGEVGLETV
Ga0307482_10285773	F009615	GGAGG	MTQVVVAGSVGEQCLGEGSPSPSVGGLLFGAPRRNGRSEARDPLRASLWLTSLQKSGVFEVISIENVSRFGIQMVTRKYWEPAELVLVSCPPGFCVQGSVVYCKKLPSEDYMLGIRLDAPVEEWMEELGLAESCRTLT

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