Scaffold Ga0308131_1043998

Overview

Basic Information

• Taxon OID: 3300030729
• Scaffold ID: Ga0308131_1043998
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1108_32.2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 933
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 139

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F078613	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308131_10439981	F078613	N/A	PIHKVMHWDAENKRRTNCLKGKYEQCSTCDKGVSIIHDYTYGIYTTNGDKTIRYLSTALSSHTNFQQSFKDHLKENVNPCDLLYKVRKGKITTPKGYETVGYEVKIVEDSKAFIAEKDRPSPFQEGTWIIPRIIAEGLTDMDRLPCNLIDLYTEMKERFPSIEEKKIKEYAILLGEGGVVDLRKAKEDTWET
Ga0308131_10439982	F010829	GAG	MGNLADHRRLREAEGLYKEDPGDGTYTKDELDYIPFLGNNPSDEKPAVYTARFKVTGGVIELEAKRSGGKLYLTCLADEKHNRALFECVERFVAAIFDGTAREISEAQPEDSELMKLKKHID