Scaffold Ga0308140_1023367

Overview

Basic Information

• Taxon OID: 3300030727
• Scaffold ID: Ga0308140_1023367
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_532_33.10 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 988
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308140_10233671	F012639	AGGGGG	MSSNNSGLVLNCTAAYAANAPIATVSPCLMQTSPVVAGVNELQVPLTENWIATDVYILATGNAAGNPTAVDPVISMDKNRGRQLVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIVRMFATSTVLNAGALSNV
Ga0308140_10233672	F015413	GGA	MESTDLEKQVETLLATPQFEQPEFDQSISSTVKDIFSKSMLVSSAGTALSVQLGNVVGKYIPMGIAPTGAGAIVAGVLLSKFGGSNRMLKDLGLGVIQGGIAQAMTPFVSGLIPAQFSQEVKTEKVAEELNPMVKGVMW