Scaffold Ga0308140_1021484

Overview

Basic Information

• Taxon OID: 3300030727
• Scaffold ID: Ga0308140_1021484
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_532_33.10 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1030
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042625	Metagenome / Metatranscriptome	158	Y
F098044	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308140_10214841	F098044	N/A	DNAQAVLGVNTTYDTMLSIEALILANPMMSELRTIGKLNKTSLMKMALMEFLKTPVSGRRLKKLFIASNSDDKFRAIIQGGKLD
Ga0308140_10214843	F042625	AGGAGG	MTDKSEKDSLWKDLKLQWSYLKRDSGADEVKKGAAKERINEIQEALKLDKTDWNQPRSGPPGSHLTNAGASPNPSDKILIEKVLGTVLDMKRVMNEEFMAITQKINSLDEKMKS