Scaffold Ga0308137_1000128

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308137_1000128

Scaffold Ga0308137_1000128

Overview

Basic Information
Taxon OID	3300030722 Open in IMG/M
Scaffold ID	Ga0308137_1000128 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_943_SCM (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7683
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (36.84%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	75.0007	Long. (^o)	-150.0027	Alt. (m)		Depth (m)	81
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099359	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308137_10001285	F099359	GGTGG	MFKVDGPHIVNERGKVLDVDSAGAKLSGNYDEENRNTVAYAKNTKIHQQWDIIYADEYPAEPKKGELNKDFGLYVERPFYIVSQLPSNRYLDLVNNRDMVIKTPNGRNTQIWYFHQDS

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