Scaffold Ga0310038_10042037

Overview

Basic Information

• Taxon OID: 3300030707
• Scaffold ID: Ga0310038_10042037
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2636
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007716	Metagenome / Metatranscriptome	346	Y
F022294	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310038_100420373	F007716	GAGG	MKSAICAVVLLTLGFVSLPVLAQQQELQEVMNATNALGARESELLSKKDAAGIASLFTSDGLLVMLAPQFEFKPGRDAIQKHYQGIIDAGATSITLELKNMELRGNDGVWAAGNYSVTVKDKTIQGNWFRILKGENGNWKIAMEAFARAGVMDVPPAATGSSPPPAKSK
Ga0310038_100420374	F022294	AGCAG	MPEFRFDPPLTLKGNIVVRNLDDAVRFMIGYREARRPELQTSVLYRLEGAAGESEERHAAYAFRGWAEAEGLIIKLDE